Friday, August 14, 2009

Bone Marrow Harvest

Hello everyone ! I’m Justin here again. Sorry for my super late posting. Hope all of you are enjoying your SIP so far =) Today I’ll talk about the harvesting process in more detail, covering the protocol, as well as some stuff to note.

As mentioned before in my previous post, harvesting is the processing step to obtain metaphases for analysis. The 3steps involved are mitotic arrest, hypotonic treatment, and fixation.

The cell cycle is arrested at metaphase by colcemid, which depolymerises tubulin, thus preventing spindle fiber formation. Although an increase in duration of exposure to colcemid causes more metaphases to be collected, a prolonged exposure to colcemid also causes chromosome contraction as an effect. This would result in shortened chromosomes, which are not suitable for analysis. Hence, the duration of colcemid exposure should be limited.

Hypotonic treatment causes water to enter the cell. 0.075M of potassium chloride is used. Cells would swell and increase in volume, thus causing chromosomes to spread out. The incubation at 37ºC will speed up the process. The duration of hypotonic treatment has to be controlled, as over-treatment will cause excess spreading of chromosomes and cell lysis.

The final step is fixation, using modified Carnoy’s fixative, which consists of methanol to acetic acid in the ratio of 3:1. The fixative has to be prepared fresh and refrigerated. This is because over time the fixative would absorb water from the surroundings, thus causing the fixative to lose its properties. Fixation hardens cells and makes them resistant to changes. Changing of the fixative (through centrifugation and removing the supernatant) also lyses red blood cells, providing a clear suspension.

In this protocol, the colcemid solution and potassium chloride are incorporated into 1 solution, known as the harvest media. 0.08µg/ml of colcemid is used. Cells are exposed to the harvest media for a duration of 30 minutes.

Method:
1.Obtain the cultures from the incubator (after their respective durations of incubation- recall first post on culture setup) and transfer the culture contents into a centrifuge tube. (This is done because the culture flasks cannot fit into the centrifuge) Centrifuge at 1500rpm for 10 minutes.

2.Remove the supernatant and add 10 ml of harvest medium to the cell pellet. (The harvest medium contains the colcemid and the hypotonic solution)

3.Incubate in a 37ºC incubator for 30 minutes.

4.After which, remove from the incubator and perform a pre-fix step by adding 2ml of fresh cold fixative. (The purpose of the pre-fix step is because cells are fragile after the 30 minutes exposure to the hypotonic solution. The fixative will harden the cells and prevent them from being destroyed by the force of centrifugation) Ensure that cell clumps are well dislodged by mixing well.

5.Centrifuge at 1200 rpm for 10 minutes.

6.Remove the supernatant and resuspend the cell pellet in 6 ml of cold fixative. (This is the fixation step) Ensure that cell clumps are well dislodged by mixing well.

7.Centrifuge at 1200 rpm for 10 minutes.

8.Remove the supernatant and resuspend the pellet in 4ml of cold fixative. (this is to change the fixative) If supernatant is still coloured, change the fixative (through centrifugation, removing the supernatant and re-suspending the pellet in 4ml of cold fixative) until it becomes clear.

9.Place the tubes in the refrigerator. (the next process would be slide making)

Per culture- 10 ml of harvest media
12 ml of fixative (2ml pre-fixation+6ml fixation+ 4ml changing of fixative)

That’s all for now. Take care everyone and enjoy SIP !

Ng Tze Yang Justin
0703747F

10 comments:

  1. Hello Justin!

    You mentioned that over-exposure of hypotonic solution is harmful to the chromosomes.
    I would like to know if an increased volume of hypotonic solution affect the cells as well?

    Another question that I would like to ask is can formalin fixative be used in place of modified carnoy's fixative?

    Thanks! :D

    Siew Ming
    TG 01 Grp 2
    0702862D

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  2. hi justin

    why is there chromosome contraction due to prolonged exposure to colcemid? i would also like to know what is colcemid? what is the principle behind it? thanks! :)

    zi shuang

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  3. hi justin!
    why do you need to put the tubes in the refrigerator?

    thanks!

    stella
    0701059H

    ReplyDelete
  4. Justin,

    What is your recommended duration of colcemid exposure?

    Li Yinliang Alex
    TG02 0704894E
    Group 8
    19 August 2009

    ReplyDelete
  5. What do you mean by chromosome spreading? Is it like how a cell spread?

    You said that the fixative has to be refrigerated to prevent it from absorbing water from the surrounding, thus causing it to lose its properties. But, there is also humidity in the refrigerator. Wont the fixative absorb those water in the air as well?

    Alvin

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  6. Hey Justin :),

    Do you only use 3:1 methanol-acetic acid as the only fixative ratio and why 3:1, what about the other ratios?

    Rachel :)

    ReplyDelete
  7. Hey SiewMai,

    Haven heard from you for a while. Hope you are well =)

    I clarify what I mentioned. Over-exposure to hypotonic solution would cause cells to lyse. This would lead to a loss of chromosomes because cell membrane integrity is lost. In cytogenetic analysis we want to see metaphase spreads of chromosomes for abnormalities. Excess hypotonic treatment would lead to lower number of metaphase spreads seen as chromosomes have been lost due to cell lysis.

    An interesting question you asked about the use of formalin as a fixative =) I found the answer from the AGT (American genetic technologists) cytogenetics manual. No, formalin cannot be used. The main reason stated is because formalin does not allow banding (staining) patterns to form. Also, formalin does not allow cells to adhere to glass slides.

    Thanks for the questions =) All the best for SIP =)


    Hi Zi Shuang,

    Chromosome contraction I think is a result of the mechanism of action of colcemid. Colcemid is a compound that is derived from Colchicum autumnale (some plant). The mechanism of action, as i’ve mentioned before is that colcemid binds to tubulin and depolymerises it, preventing spindle fiber formation. Colcemid is a mitotic arrestant that arrests the cell cycle at metaphase.

    I’m sorry i did not mention what colcemid is in my post. I’ll be more careful in future. Hope you are enjoying your SIP =) All the best =)


    Yo Stella,

    The tubes have to be put in the refrigerator as sometimes, slides are not made immediately on the same day. The cells are left in the fixative to allow them to harden.


    Hi Alex,

    Hope you are well =)

    Hmm recommended duration? =)There is no recommended duration. A balance has to be made between the number of metaphase spreads obtained and the length of chromosomes (A longer duration of exposure to colcemid will lead to more metaphases being available, but will lead to shorter chromosomes). It is a trial and error process by the lab to determine what works best. The protocol my lab uses allows exposure of 30 mins (as mentioned in the post). =)

    Take care, nice seeing you at white sands that day =) Was doing my grocery shopping.


    Hey Alvin,

    Interesting question you asked. I suppose putting it in the refrigerator slows down the absorption process compared to just leaving the fixative at room temperature =)


    Hi Rachel,

    The bone marrow section uses 3:1 methanol-acetic acid fixative. I harvest some of FISH section samples also. I not very sure about what pre-natal uses cuz I never been there yet. Will ask and get back to you. How about your side ? =)what does your lab use as fixative for harvest =) I suppose 3:1 is a pre-determined ratio. Are there any other ratios you heard of ?

    Take care and all the best for your MP =)


    Thanks everyone for the questions =)
    Ng Tze Yang Justin
    0703747F

    ReplyDelete
  8. Hi everyone,

    I'm sorry i made a mistake. AGT is the association of genetic technologists, not American genetic technologists.

    Alvin, i forgotten to answer one part of your question. Chromosome spreading is how well spaced apart the chromosomes are under the microscope.

    Take care,

    Ng Tze Yang Justin
    0703747F

    ReplyDelete
  9. Hey Justin, :)

    If I am not wrong for culturing and harvesting of blood specimens, they use 3:1 fixative.(methanol-acetic acid).

    How is your spread for bone marrow specimen? Are they tight?

    Rachel:)

    ReplyDelete
  10. Hi Justin !

    I have recently joined a prenatal cytogenetics diagnostic lab and been handed the responsibility of processing samples such as amniotic cells, chorionic villi, heparinized peripheral blood. Our lab uses 1% sodium citrate for amniotic cells & chorionic villi samples and 0.56% KCl for peripheral blood as hypotonic solutions respectively. I would like to know what is the specific reason for using the two solutions distinctly for different sample types.

    Thanks!

    Rucha

    ReplyDelete